Dataset for Circadian Patterns of Gene Expression
Dataset in support of
Circadian patterns of gene expression in the human brain and disruption in major depressive disorder
Jun Z. Li1,*, Blynn G. Bunney2, Fan Meng3, Megan H. Hagenauer3, David M. Walsh2, Marquis P. Vawter2, Simon J. Evans3, Prabhakara V. Choudary4, Jack D. Barchas5, Alan F. Schatzberg6, Edward G. Jones4, Richard M. Myers7, Stanley J. Watson3, Huda Akil3, William E. Bunney2
1. Department of Human Genetics, University of Michigan, Ann Arbor, MI 48109, USA.
2. Department of Psychiatry & Human Behavior, University of California, Irvine, CA 92697, USA.
3. Molecular & Behavioral Neuroscience Institute, University of Michigan, Ann Arbor, MI 48109, USA.
4. Center for Neuroscience, University of California, Davis, CA 95616, USA.
5. Department of Psychiatry, Cornell University, New York, NY 10017, USA.
6. Department of Psychiatry, Stanford University, Palo Alto, CA 94305, USA.
7. HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Overview
ACG | DLPFC | CB | AMY | HC | NACC | Total | |
---|---|---|---|---|---|---|---|
All U133A microarrays | 283 | 367 | 162 | 135 | 236 | 293 | 1476 |
Filtered microarrays | 277 | 337 | 160 | 135 | 229 | 286 | 1424 |
Filtered & for controls | 124 | 161 | 79 | 62 | 108 | 136 | 546 |
Unique samplesa | 153 | 172 | 104 | 70 | 137 | 140 | 776 |
Unique controlsb | 70 | 83 | 51 | 32 | 63 | 66 | 365 |
Controls with TOD | 55 | 52 | 34 | 29 | 48 | 51 | 269 |
MD cases with TOD | 34 | 33 | 14 | 13 | 32 | 29 | 155 |